Imablog Perspectives of a Canadian in the Old/Deep/New/Geographic South: This is where I ramble on about nothing in particular and post a few nice pictures.

Posts from January 2004

Happy new year!

Happy new year everyone! Hope 2004 brings many happy times and significant accomplishments for everyone.

I plan to spend a good portion of today relaxing in front of the TV flipping between the Mythbusters marathon on Discovery channel and the MadTV marathon on Comedy Central.

Things I want to accomplish this year:

  • Finish developing my radiology equipment inventory/survey database more
  • Work out more
  • Get my wife's credit card paid off, and a big chunk of my credit card paid down
  • Finish some research projects and publish more
  • Jazz up this blog a little bit

My blog reviewed!

Submitted the blog for review to the folks over at Weblog Review a while ago, and yesterday it got reviewed. A very fair and kind review and the reviewer (fembat) seemed to accurately assess the purpose of this blog (I'm certainly not after mass appeal with it).

Thanks TWR :)

Friday Five, late again

This is only late because there wasn't a new one up when I checked on Friday, and never got around to checking again later on.

What one thing are you most looking forward to . . .

1. ...today?
Lunch with my wife.

2. ...over the next week?
Lunches with my wife before she heads back to school.

3. ...this year?
Getting more papers written

4. ...over the next five years?
Enjoying my work even more.

5. ...for the rest of your life?
Spending it with my wife.

Getting in shape

My wife and I have both decided it's time to get back into shape. I've managed to pack on a few extra pounds since I stopped cycling when I moved to the US, and wouldn't mind losing them. So we're going to try out the Discovery Health Channel's National Body Challenge.

In 12 weeks, my goal is to drop about 15-20 pounds and try to keep it off. It'll mean changing some of our cooking and eating habits, which I think is going to be the tough part. Starts at the end of the week on Jan 10. This ought to be fun :)

Adventures at the DMV

Actually, it was more of a non-adventure (aside from driving past it and having to turn around).

Note for next time, the SC DMV office on Leeds Ave is across the street from the County Detention center. Must be convenient for them if they happen across someone with an oustanding warrant. The security folks can just march them across the street and be done with it.

Like most states, SC has new requirements for non-US citizens getting driver's licenses. Mostly it's just more paperwork to bring, and there are only a few offices you can go to. I got there, got a number from the nice lady at the front desk, filled out a form and had a seat. Waited about 20 minutes before my number was called and 10 minutes later I was handed a sheet of paper that was my temporary license (I guess it's to tide me over while they inspect my credentials) and had what was probably another cheesy photo taken for my driver's license. Impressively speedy service.

Happy birthday to me!

Today is my 34th birthday. Not so much different from my 33rd, or 32nd or 31st for that matter.

I think once you turn 30, birthdays stop becoming quite such a big deal for you and start becoming a big deal for the people around you. Friends and family always asking "So how does it feel?", or "Feel any different?", or other silly questions like that. And then instead of you heading out with friends to go out and party and get drunk, they're the ones dragging your tired ass out after work to see how drunk they can get you. If they're anything like my friends back home, they've probably also got pools going on how long it takes to get to the first spew of the night. Or having the bartenter add a few extra shots to your drinks without telling you.

For me, it'll be just another day, although perhaps I'll treat myself with a trip out to Best Buy or the bookstore and buy me something.

Commenting fixed

Thanks to a heads up from Melissa, commenting is fixed. It was just me forgetting to upload a file when I upgraded MT Blacklist.

A delightful birthday

Had a very delightful birthday evening today.

Escaped from work early, did some much needed grocery shopping, and then headed out for a delicious dinner at Dragon Palace. If you like Chinese food, there are only two places to go in Charleston: Dragon Palace and Red Orchid. Mmmm, oh so good...

Then it was off to Best Buy for some indulgent spending :). Didn't leave quite as happy as the guy carting home the 50" Panasonic flat screen TV though. Maybe someday...

National Body Challenge Weigh In

Ok, today's the day. Discovery Channel's National Body Challenge weigh in.

So just how pudgy have I become over the past few years? Do I want to know? Stepped on the scale, listened to it groan, watched the dial spin and bounce back and forth until it settled on 176. 176!?! Must have been a mistake. Stepped off, made sure the scale was properly zeroed, and stepped back on. There again, it settled on 176. Oh dear. Guess I've got some work to do.

Logging into the website to record my stats, their calculator tells me that my approximate body fat percentage is 19%. I think that makes me pretty soft.

So here are the rest of the measurements I recorded.
Height: 5'7" (170 cm)
Chest 37.75" (95.9 cm)
Waist 36" (91.4 cm)
Hips 41" (104.1 cm)
Thigh 24" (61 cm)
Bicep 12.75" 32.4 cm)

All the stats of a big oversized tube of goo.

Hopefully as I go along, some of these will change. If I'm really good, they'll even go down.

Fridge is stocked with lots of nice fresh veggies and fruits and other healthy things.

Let the challenge begin!

Oops, much work to do

Ooops, with the holidays and last minute rush to get stuff done in December, the AAPM CT Noise Metric TG task I volunteered for completely slipped my mind. Much research and writing to do now before the end of the month.

Back to the moon

Hmm, so President Bush wants to go back to the moon. While I am cautiously optimistic about renewed NASA funding, especially in light of the significant budget cuts NASA has experienced over the past decade, I'm still a little skeptical about Bush's vision, especially considering this is an election year. Along with his immigrant worker proposal, it just smacks of political pandering to the masses to me. But in any case, more funding for NASA is always a good thing.

I know we've been to the moon before, but considering how we can hardly keep a space station in Earth orbit, I can't see a moon base coming in my lifetime. I'll be very happy to be proven wrong though.

Personally, I would like to see ISS construction and expansion continue with more support and participation from other countries, with the goal of using it as a launching pad for missions to the moon and Mars. Make ISS and future lunar and planetary missions a truly global effort.

MT 2.66 released

Just saw that MovableType released a new version, MT 2.66. Looks like it's mostly to deal with the comment spam problem. Hopefully this will help keep comment spam manageble until 3.0 comes out.

Off to the rodeo

My wife has developed a recent and inexplicable fascination with the rodeo. I think it must be related to her current obsession with horses. So tomorrow, we're off to see the PBR Challenge at the North Charleston Coliseum for a rip-roaring boot stomping good time. Or at least to see some guys get tossed up in the air.

I wonder what would happen if I started rooting for the bulls...

Terror alert level

Terror Alert Level
Well, this is one of the more entertaining alerts I've seen :)

Found at CheekySquirrel

Friday Five

Hey, it's on time this time!

1. What does it say in the signature line of your emails?

---------------------------------------------------------------------
Eugene Mah, M.Sc., DABR               eugenem@ix.netcom.com
Medical Physicist/Misplaced Canuck    maheug@musc.edu
Department of Radiology               "For I am a Bear of Very Little
Medical University of South Carolina   Brain, and long words Bother
Charleston, South Carolina             me."   Winnie the Pooh
http://www.netcom.com/
http://blog.imabug.net/
PGP KeyID = 0x1F9779FD, 0x319393F4
PGP keys available on request         ICQ 3113529                 O-
---------------------------------------------------------------------

2. Did you have a senior quote in your high school yearbook? What was it? If you haven't graduated yet, what would you like your quote to be?
Nope, I don't think I did, or else I don't remember what it was.

3. If you had vanity plates on your car, what would they read? If you already have them, what do they say?
I want IMABUG.

4. Have you received any gifts with messages engraved upon them? What did the inscription say?
Nope

5. What would you like your epitaph to be?
Just my name, birthdate and date I died.

Body Challenge Week 1

Week 1 is over. No significant change in weight, but I didn't expect there to be any. We've changed our diet somewhat, and the way we cook, making an effort to introduce more veggies. Calorie intake is down, but that means I have that munchie feeling all the time. Eating smaller meals more frequently helps, but I think once I get used to the lower calories, the munchies will go away. Even though I haven't lost any weight yet, I feel better, and am looking forward to gearing up my exercise routine.

Based on what I learned during my past life as a runner and cyclist, I'm opting for the slow and gradual change, targeting to lose maybe 2-3 pounds/week. Nothing fast or dramatic. I'll be quite content if I've managed to drop 10 pounds or so by the end of this challenge.

My AAPM homework

My assignment for the AAPM task group I'm on is to write a background blurb on the effect of reconstruction filters on CT images.

It's always hard for me to get started when it comes to writing stuff like this, or writing papers. Where to begin, what to talk about, how to organize it... Once I can get started, I'm usually OK though. Getting started is the hard part.

So far, my plan is to have a brief overview of the image reconstruction algorithm, emphasizing the filter. Then a discussion on different classes of filters along with how they affect the image.

Chinese New Year

In a few days it will be the start of the Chinese New Year. It will be the Year of the Monkey (a Green Wooden Monkey at that). All over the world, anywhere there is a significant Chinese population, there will be celebrations, firecrackers, and dragon/lion dances. There will be feasts, and large family get togethers.

I remember as a kid, going downtown, watching the lion dances, and getting scared by the firecrackers and loud drum noises. So much excitement around. It was a fun time, and something I've missed since moving to the US. All of the places I've lived so far have lacked a significant Chinese population, so I've missed the festivities. Maybe this year I'll find something.

What is: Soylent Green?

I don't know why, but the phrase "Soylent Green" has been running through my head for the past few days. Just pops ito my head for no reason, crashes into my current train of thought, and disappears. Then I'm left wondering "What the hell was that?!". It's like a hit and run or something. So I decided to see what I could find about this word Soylent.

  • It's a movie. Don't know anything about it other than it's a sci-fi movie about an overcrowded earth where people eat something called Soylent in various colours. Apparently the shocker is what Soylent Green is made from.
  • It's also a drink, no doubt fashioned to resemble something consumed in the movie.
  • Soylent Green at Urban Dictionary
  • A vegan, health food oriented co-op in Chicago
  • A parody song

Mars Scorecard

The Mars Scorecard is a pretty funny play-by-play summary of the our record with Martian probes over the past 40 years. So far, the Martians are winning.

Journal Club: Phase Contrast Imaging

This is an effort to get me to read more of the journal articles I find. More often than not, I run across an interesting article, skim through it, put it in my Read This Soon pile, and then it gets forgotten about.

So I think what I shall try to do is when I run across an interesting article (interesting to me, hopefully some others), I shall post it here along with the abstract and article reference. Then after I've read the article, I'll try to write up a short blurb of my thoughts on it.

So the first journal club article is one from Medical Physics.

Wu X, Liu H, "Clinical implementation of x-ray phase-contrast imaging: Theoretical foundations and design considerations", Med Phys 30, 2169-2179 (2003)

Abstract:

Theoretical foundation and design considerations of a clinical feasible x-ray phase contrast imaging technique were presented in this paper. Different from the analysis of imaging phase object with weak absorption in literature, we proposed a new formalism for in-line phase-contrast imaging to analyze the effects of four clinically important factors on the phase contrast. These are the body parts attenuation, the spatial coherence of spherical waves from a finite-size focal spot, and polychromatic x-ray and radiation doses to patients for clinical applications. The theory presented in this paper can be applied widely in diagnostic x-ray imaging procedures. As an example, computer simulations were conducted and optimal design parameters were derived for clinical mammography. The results of phantom experiments were also presented which validated the theoretical analysis and computer simulations.©2003 American Association of Physicists in Medicine.

Med school interview

Wooo, after much tooth gnashing and wailing and anguishing, my wife got a call from the MUSC Admissions people about scheduling an interview. It's scheduled for next Friday (Jan 30), so if she does well (I know she will) she'll be med school bound next fall!

Yay!

Company Coming

Company is coming tomorrow. A friend of my wife has an interview for the MD/PhD program at MUSC on Friday. Must clean.

Am I Sad or What

Is it really sad when your Christmas tree has been sitting out until yesterday?

There it was, sitting on our dining room table (it's not a very big tree) being neglected for the past month or so (shows you how much we use our dining room table). Finally got around to noticing it again and deciding it was probably time to take the darned thing down and put it away for another year. Now we can use our table again! Like any other flat surface in my apartment though, it ends up being used as storage space.

2003 True Stella Awards

The winners of the 2003 Stella Awards have just been announced! This is the real thing now, not the fake ones that have been making the rounds.

And the winner is...

The City of Madera, Calif. Madera police officer Marcy Noriega had the suspect from a minor disturbance handcuffed in the back of her patrol car. When the suspect started to kick at the car's windows, Officer Noriega decided to subdue him with her Taser. Incredibly, instead of pulling her stun gun from her belt, she pulled her service sidearm and shot the man in the chest, killing him instantly. The city, however, says the killing is not the officer's fault; it argues that "any reasonable police officer" could "mistakenly draw and fire a handgun instead of the Taser device" and has filed suit against Taser, arguing the company should pay for any award from the wrongful death lawsuit the man's family has filed. What a slur against every professionally trained police officer who knows the difference between a real gun and a stun gun! And what a cowardly attempt to escape responsibility for the actions of its own under-trained officer.

It's tax time!

Found my W-2 on my desk today. That means it's the start of that dreaded tax season. But, since I don't own a house, or have any investments outside my 401K, taxes for me are pretty simple. And I use TurboTax and E-file my return, so about all I have to do is enter numbers and see how much more I owe, or how much I get back. Pretty simple if all you need to do is fill out the 1040 or 1040EZ. And if you're expecting a refund back, it shows up in your bank account automagically in just a couple of weeks! It's the way to go.

A happy Chinese New Year

Had a delightful Chinese New Year celebration at my wife's boss's house. Mostly people from the lab she works in, lots of good food. It's become a pretty multi-cultural lab since my wife started working there. Where else can you go to celebrate Chinese New Year, and have a conga line and salsa dancing break out? A good time was had by all I think. It was a good start to the new year.

RSS Feed validating

Over at Dive into Mark, he talks about RSS Feed validating, and how even with feed validating services, there are still plenty of RSS feeds with badly formed XML. So there's this nifty feed validator that's simple to use, and offers suggestions to fix your bad feeds. Very neat. Worth checking out.

Friday Five

At this moment, what is your favorite...

1. ...song?
Man in Motion by John Parr

2. ...food?
Cold smoked salmon

3. ...tv show?
Stargate SG1

4. ...scent?
Chocolate

5. ...quote?
The one in my email sig,
"For I am a Bear of Very Little Brain, and long words Bother me." Winnie the Pooh

Body Challenge Week 2

Ok, it's the end of week 2, and although I haven't been able to squeeze in any work out sessions yet (although I've been doing a lot of walking around and still take the stairs everywhere I go), I've still managed to drop 4 pounds, so now I"m down to 172. Feels good. Really need to start doing some workouts though, but with this AAPM assignment I need to get finished by next week, I don't seem to have much time. Maybe this coming week.

My Yahoo! has RSS aggregating!

Learned from Jeremy Zawodny that My Yahoo! now has an RSS aggregator module you can put on your My Yahoo! page. I might actually start using the thing again now. It's only in beta, but I haven't seen anything resembling a problem yet in the 5 minutes I've been casually using it. And you can even ping it.

US Patent office silliness

I've seen the USPTO grant some pretty ridiculous patents over the past few years, but I think patent 6,671,714 (story at Slashdot and Geek.com) takes the cake.

From the abstract of the patent:

The present invention comprises a method, apparatus and business system for allowing on-line communications with members of a group of recipients for whom the invention has been implemented. A group may, for example, comprise members of a particular business or profession. For example, a group may consist of doctors admitted to practice medicine in the United States. Individual members of the group may or may not have existing internet presences. The invention allows online users to communicate with each member of a given group regardless of whether or not the member has an existing internet presence. In one or more embodiments, the invention does so by setting up a database of contact information for members of the group, creating an internet presence for each member of such group, creating an on-line user interface allowing a user to access the member's created internet presence, and providing means of communications between the created internet presence and the member recipient.

And furthermore, claim

  1. A method for assigning URL's and e-mail addresses to members of a group comprising the steps of:
    • assigning each member of said group a URL of the form "name.subdomain.domain"; and
    • assigning each member of said group an e-mail address of the form "name@subdomain.domain;"
    • wherein the "name" portion of said URL and said e-mail address is the same and unique for each particular one of said members such that an only difference between said URL and said e-mail address for said member is that in said URL the "@" symbol of the e-mail address is replaced with a "." and wherein said "subdomain" portion of said URL and said e-mail address is the same for all members of said group.
  2. The method of claim 1 wherein said members of said group comprise members of a licensed profession.

So essentially what the patent was granted for is a way of assigning domain names, URLs and email addresses like

  • tom@runspotrun.com, http://tom.runspotrun.com/
  • jane@runspotrun.com, http://jane.runspotrun.com/
  • harry@runspotrun.com, http://harry.runspotrun.com/
And they have the gall to call this an invention!

And as patent owners are prone to do, the patent owner promptly proceeded to file lawsuits against two TLD registration companies for patent infringement, essentially a form of government santioned extortion. A patent that should never have been granted if collective people at the USPTO had a brain among them. A patent for which it should be fairly trivial to find prior art for, considering the patent was only filed in 1999.

Really makes one wonder about the people who work at the USPTO and review applications. How much research gets done researching the validity of a patent? What kind of training and background do these examiners have? Some of patents that have been granted recently really want to make you smack all of them with an idiot stick.

Journal Club: Phase Contrast Imaging

The idea behind this paper is relatively easy to get. Traditionally, x-ray imaging is examined using the 'light as particle' method of thinking. It works, and the math is easy. But nobody really examines x-ray imaging from the 'light as a wave' point of view. Recently though, there have been a number of articles looking at phase imaging for x-ray systems. This article (Wu X, Liu H, "Clinical implementation of x-ray phase-contrast imaging: Theoretical foundations and design considerations", Med Phys 30, 2169-2179 (2003)) is one of them.

It's a topic that I've been peripherally interested for a while. I've always wondered what x-ray imaging physics might look like formulated from the 'light as wave' perspective.

One thing I found interesting was that the refractive portion of the refractive index for tissue (δ, Eq 1 & 2) was much larger than the absorptive portion (β, Eq 1), the implication being that it ought to be relatively easy to do phase based imaging.

One of the interesting things in this paper is that the authors extend the theory of phase contrast imaging to real-world x-ray machines as opposed to specialized micro-focus x-ray units or monochromatic x-rays from a synchrotron (Section II.C) and end up predicting things that previous treatments did not (A Pogany, D Gao, S Wilkins, "Contrast and resolution in imaging with a microfocus x-ray source", Rev Sci Instrum 68, 2774-2782 (1997). Mammography machines fit the resolution requirements for observing phase contrast, but an x-ray tube with a smaller focal spot is needed. Still, the requirements aren't something you find in a run-of the mill x-ray unit. However, the fact that phase contrast imaging can be done with polychromatic beams is exciting.

Theory is tested by simulating a mammography imaging system to find optimal values for source-object and object/detector distances. Experiments also illustrate the exciting prospects of phase contrast imaging in mammography (Section IV).

A well written paper, with some very interesting and promising results. Some of the more complicated math has been glossed over, but details can be found in another paper by the same authors.

Spirit and Opportunity computer guts

A post over at Slashdot and an article over at Space.com talk about the computational innards of the Spirit and Opportunity rovers. They're surprisingly low-tech, but work well and NASA seems to find them reliable.

From the Space.com article,

RAD6000 microprocessors are radiation-hardened versions of the PowerPC chips that powered Macintosh computers in the early 1990s, with 128 megabytes of random access memory (RAM) and capable of carrying out about 20 million instructions per second.

Not as powerful as one might think, but then again I suppose you don't need much computing power to operate a robot. They did jam it full of memory though.

What I think is more cool is

In addition to VxWorks' reliability, the system allows users to add software patches -- such as a glitch fix or upgrade -- without interruption while a mission is in flight. "We’ve always had that [feature] so you don't have to shut down, reload and restart after every patch," Blackman said, adding that some commercial desktop systems require users to reboot their computers after a patch

Now if only Microsoft could make Windows do that...

Journal Club: Optimization of Ga-67 Imaging

Nuclear medicine is one of the areas I specialize in, so this week's article is in that area. El Fakhri G, Moore SC, Kijewski MF, "Optimization of Ga-67 imaging for detection and estimation tasks: Dependence of imaging performance on spectral acquisition parameters", Med Phys 29, 1859-1866 (2002).

Ga-67 is commonly used for tumour imaging, localization and staging. It has three photopeaks, 93, 185 and 300 keV, although commonly only the 93 and 185 keV photopeaks are used for imaging. This article examines ways to optimize the energy windows to maximize SNR and to take advantage of all three photopeaks.

Abstract:

We have compared the use of two (93 and 185 keV) and three (93, 185, and 300 keV) photopeaks for Ga-67 tumor imaging and optimized the placement of each energy window. Methods: The bases for optimization and evaluation were ideal and Bayesian signal-to-noise ratios (SNR) for the detection of spheres embedded in a realistic anthropomorphic digital torso phantom and ideal SNR for the estimation of their size and activity concentration. Seven spheres of radii ranging from 1 to 3 cm, located at several sites in the torso, were simulated using a realistic Monte Carlo program. We also calculated the ideal SNR for the detection from simple phantom acquisitions. Results: For detection and estimation tasks, the optimum windows were identical for all sphere sizes and locations. For the 93 keV photopeak, the optimal window was 84–102 keV for the detection and 87–102 keV for estimation; these windows are narrower than the 20% window often used in the clinic (83–101 keV). For the 185 keV photopeak, the optimal window was 170–220 keV for the detection and 170–215 keV for estimation; these are substantially different than the 15% window used in our clinic (171–199 keV). For the 300 keV photopeak, the optimal window for detection was 270–320 keV, and for estimation, 280–320 keV. Using the three optimized, rather than only the two lower-energy, windows yielded a 9% increase in the SNR for the detection of the 3 cm diam sphere (a 12% increase for a 2 cm diam sphere) and a 7% increase in the SNR for estimation of its size. For the acquired phantom data, detection also increased by 9%–12% when using three, rather than two, energy windows. © 2002 American Association of Physicists in Medicine.

Friday Five

You have just won one million dollars:

1. Who do you call first?
Probably my wife, unless she was there with me when I win. Then I might call my sister or brother.

2. What is the first thing you buy for yourself?
The complete Babylon 5 series, Stargate SG1 series, and the Star Trek film series, all on DVD. And maybe a Trek 2300 with all the accessories.

3. What is the first thing you buy for someone else?
Probably the horse and Nissan Titan my wife wants.

4. Do you give any away? If yes, to whom?
Set up some scholarships for physics students at University of Alberta and donations to the Canadian Diabetes Association and American Diabetes Association.

5. Do you invest any? If so, how?
I think I'd sock away about half of it in various investments. I'd have to find a financial advisor to consult with, someone who came highly recommended by someone I trust.

Body Challenge Week 3

Ok, week three is over, and I'm afraid I haven't really made much progress into starting my exercise routine. None at all really. But I've managed to maintain 172 lbs (78 kg) at least. Still walking and climbing stairs wherever I go.

Interview day

Today's the day. The day of my wife's med school interview. At this very moment, she's probably somewhere being interviewed by a doctor, or med student trying to learn more about her and why she wants to be a doctor. I think she'll do fine, and I think she'll impress them enough to get in. She's been working hard for this, and she's been working hard to get prepared all week. With any luck, in a couple of weeks or so, I should find out if I'm married to a prospective doctor or not.